| |
|
AtCHX04 / At3g44900 ›› ARAMEMNON · TAIR · PLANTS T · MIPS · TIGR
|
| |
|
Exon/Intron Map (from TIGR):
|
| |
|
Sequences ›› partial cDNA [ Sze Lab ] · BAC F28D10 [ ATG-STOP: 29329 - 31965 ]
|
| |
|
Genomic DNA (3637 bp):
Coding sequence -- confirmed by cDNA from Sze Lab -- in blue.
Start: 500 bp before ATG; End: 500 bp after STOP
1 gtgtttggtg ttttgaactt gcaggaacgt atagagaggg aaaagagagt agcctcttgt
61 ggtgaggatt gaaggttgtg aagtttttcc tttagattgt ttgatgcatt tgtatttttg
121 ctatttttgg aatctggaaa cgctaaaagt ataatattct cttgcaagtt atgatattta
181 cttgaagtta tattgtattc atttgtctgt tgaagtgatg agaatgctta aattaacact
241 aacaagctgt ttaaaaaact aacaaataac cagaaatctg aaaaactatg tcgccgtctc
301 ttgttcccac aagattgact atttttagag agttgttgtt taatgacaaa acccagatgt
361 ttttttgttt cactgcttct cttcaattct gttaccaaaa ccttttttgt ttaagacagt
421 tatagctctt gattcggttt ttataatcat atgattctct tgtttctatc atctttgttc
481 ttgttaacaa gttttgtcca ATGGAGTTTA ATGGTGATAG GATCCCTTAC CTGAGAGATA
541 CATGGAGAGA TGCAAACATG ATCTGCGGTA TCTTGCCTAT TAACCCGAGC TCGAGCGGGC
601 TATGGCCCTC CCCGAAGCTC CCAGATCCTC AAGCAAACAT TGAGTTCTGG AATTACATGT
661 TTCCACATGT TCAGATCATT TTCCTTATCG TCACTATTCT CTGGCAATTC TTCCATTTCT
721 TCCTCAGACG TCTCGGCATG ATTCGTTTCA CCTCCCATAT GCTTgtaaga actttactca
781 attcttgaat cttcaaatct ctcttcctct ttgtttgcat tgcttatgtt tgatattctg
841 tgtggttttg ccagACTGGG ATTCTCTTGA GCAAGTCGTT TCTTAAGGAG AATACACCGG
901 CTAGGAAATT CCTCTCGACG GAAGACTATA AAGAGACTCT GTTTGGTTTA GTGGGTGCAT
961 GTTCCTACAT GATGTTTTGG TTCTTGATGG GAGTTAAAAT GGACTTGAGT TTGATCCGCA
1021 GCACCGGGAG AAAAGCTGTA GCTATCGGTC TTTCCTCAGT GTTACTCTCT ATAACGGTTT
1081 GCGCCTTGAT CTTCTTCTTG ATCCTAAGAG ATGTAGGGAC GAAAAAGGGA GAACCGGTTA
1141 TGAGTTTCTT TGAAATCATT TTCATCTATT TGATCCAATG CCTTTCGTCG TTTCCTGTAA
1201 TTGGAAACCT TCTTTTTGAG CTTAGGCTCC AGAATTCAGA GCTTGGCCGT CTCGCTATGT
1261 CTTCTGCAGT GATCAGTGAC TTCAGCACCT CGATCCTCTC TGCGGTTCTA GTCTTTCTAA
1321 AGGAACTCAA GGACGATAAA TCTCGGCTTG GATCAGTTTT TATCGGAGAT GTTATTGTTG
1381 GAAACCGTCC TATGAAGCGT GCGGGCACAG TGGTCTTGTT TGTTTGTTTT GCCATATACA
1441 TATTCAGACC ATTAATGTTC TTCATTATCA AGAGAACACC TTCTGGTCGT CCCGTAAAGA
1501 AATTCTATAT ATATGCAATC ATCATTCTTG TCTTTGGATC AGCCATTCTT GCCGATTGGT
1561 GCAAGCAATC TATTTTCATA GGACCTTTTA TCTTAGGCTT AGCTGTTCCA CACGGTCCAC
1621 CTCTAGGCTC TGCAATACTT CAGAAGTTTG AGTCTGTGGT TTTCGGCACA TTCCTTCCTT
1681 TCTTTGTGGC TACCTCCGCG GAAGAGATCG ATACTTCGAT TTTACAGTCT TGGATAGATC
1741 TCAAGAGTAT TGTCATCCTA GTGTCTGTAT CGTTTATTGT CAAATTCGCT CTCACGACTC
1801 TCCCTGCCTT CTTATACGGT ATGCCAGCAA AGGATTGCAT TGCTCTGTCT CTAATTATGT
1861 CATTCAAAGG CATTTTCGAG TTCGGTGCTT ACGGTTATGC GTATCAAAGA GGGgtaagta
1921 aatgtatttg acatatttcc ttcaaaatgt atctaacaca ttttgataca ctcagaaact
1981 gagcttagta ttcattttga ttgcagACTA TTCGGCCGGT GACCTTTACG GTTTTATCTT
2041 TGTACATCTT GTTGAACTCT GCAGTCATAC CTCCGCTCTT AAAACGCATT TATGATCCTT
2101 CGAGGATGTA CGCAGGATAC GAGAAGCGGA ACATGCTTCA CATGAAACCA AACTCCGAGC
2161 TCAGGATTCT ATCGTGTATC TACAAAACAG ACGATATCCG TCCGATGATC AATCTCCTTG
2221 AAGCTACTTG TCCCTCAAGA GAAAACCCTG TAGCTACTTA CGTCCTTCAC TTGATGGAGC
2281 TAGTAGGACA AGCCAATCCA GTCCTCATCT CTCACCGATT ACAAACCCGT AAAAGTGAGA
2341 ACATGTCTTA TAATTCTGAA AACGTCGTTG TCTCATTCGA ACAGTTCCAC AACGATTTTT
2401 TCGGCTCTGT TTTCGTTAGC ACTTACACGG CTTTATCCGT GCCGAAGATG ATGCACGGAG
2461 ACATCTGTAT GCTGGCTTTA AACAACACAA CGTCTCTCAT CATCCTTCCT TTTCACCAGA
2521 CTTGGTCTGC TGATGGATCA GCCATTGTTT CAGACAGCCT AATGATCCGG CAACTGAACA
2581 AGAGTGTCCT CGACCTCTCT CCTTGCTCTG TCGGAATCTT CGTCTATCGA AGCAGTAATG
2641 GACGGAGAAC AATCAAAGAG ACAGCTGCAA ACTTCTCATC TTACCAAGTT TGTATGCTCT
2701 TTCTTGGAGG TAAAGACGAT AGAGAAGCTT TATCACTCGC CAAGAGAATG GCTCGTGATT
2761 CAAGAATAAC CATCACAGTG GTTTCACTCA TCTCTTCCGA ACAGAGAGCG AACCAAGCAA
2821 CCGACTGGGA TCGCATGCTC GACTTAGAAC TACTCAGAGA CGTGAAAAGC AACGTTCTAG
2881 CCGGTGCTGA CATTGTCTTC TCCGAGGAAG TAGTGAATGA CGCAAATCAA ACATCACAAT
2941 TGTTGAAATC TATTGCGAAT GAGTATGATC TGTTCATCGT CGGAAGAGAA AAAGGAAGGA
3001 AGAGTGTTTT CACCGAGGGG CTTGAAGAAT GGAGTGAGTT TGAAGAACTT GGTATCATTG
3061 GAGATCTCTT GACTTCACAG GATCTAAATT GTCAAGCTTC TGTGTTGGTG ATACAACAGC
3121 AACAACAGAT GATCTAGgat ttttaagaaa tcaggagatg actaatagaa cgagtgtttc
3181 ttggggatag aaacatcgat cgatcagctg gaaatggcaa cgagagagtc ttggggcttc
3241 tggaagttgc ctcggcacat atacagagat gtgaagccct agttgttacc atttcatgtt
3301 agaaattgat tagaaacaaa gactttcttg agttccaagt aatgattaca atgtttttga
3361 atgttgtata tatttcaacc tatttcaatc tgtgaatagt tagagatgtt tttttccgag
3421 ttttggctta aaaattggtt acatataaaa ttagtttttt ttttcttttc tcaaatctca
3481 attacggatt ttaaatataa aaacagaatc taattttttt tttttttttt ttgcatacgt
3541 tagttatgtt cttttttttc ttttttaata gattttcggc ccaaacctgt aattattgca
3601 atctcaggcc cgaaacaata gcatttaata tgttagt
|
| |
|
Predicted Coding Sequence (2454 bp):
1 ATGGAGTTTA ATGGTGATAG GATCCCTTAC CTGAGAGATA CATGGAGAGA TGCAAACATG
61 ATCTGCGGTA TCTTGCCTAT TAACCCGAGC TCGAGCGGGC TATGGCCCTC CCCGAAGCTC
121 CCAGATCCTC AAGCAAACAT TGAGTTCTGG AATTACATGT TTCCACATGT TCAGATCATT
181 TTCCTTATCG TCACTATTCT CTGGCAATTC TTCCATTTCT TCCTCAGACG TCTCGGCATG
241 ATTCGTTTCA CCTCCCATAT GCTTACTGGG ATTCTCTTGA GCAAGTCGTT TCTTAAGGAG
301 AATACACCGG CTAGGAAATT CCTCTCGACG GAAGACTATA AAGAGACTCT GTTTGGTTTA
361 GTGGGTGCAT GTTCCTACAT GATGTTTTGG TTCTTGATGG GAGTTAAAAT GGACTTGAGT
421 TTGATCCGCA GCACCGGGAG AAAAGCTGTA GCTATCGGTC TTTCCTCAGT GTTACTCTCT
481 ATAACGGTTT GCGCCTTGAT CTTCTTCTTG ATCCTAAGAG ATGTAGGGAC GAAAAAGGGA
541 GAACCGGTTA TGAGTTTCTT TGAAATCATT TTCATCTATT TGATCCAATG CCTTTCGTCG
601 TTTCCTGTAA TTGGAAACCT TCTTTTTGAG CTTAGGCTCC AGAATTCAGA GCTTGGCCGT
661 CTCGCTATGT CTTCTGCAGT GATCAGTGAC TTCAGCACCT CGATCCTCTC TGCGGTTCTA
721 GTCTTTCTAA AGGAACTCAA GGACGATAAA TCTCGGCTTG GATCAGTTTT TATCGGAGAT
781 GTTATTGTTG GAAACCGTCC TATGAAGCGT GCGGGCACAG TGGTCTTGTT TGTTTGTTTT
841 GCCATATACA TATTCAGACC ATTAATGTTC TTCATTATCA AGAGAACACC TTCTGGTCGT
901 CCCGTAAAGA AATTCTATAT ATATGCAATC ATCATTCTTG TCTTTGGATC AGCCATTCTT
961 GCCGATTGGT GCAAGCAATC TATTTTCATA GGACCTTTTA TCTTAGGCTT AGCTGTTCCA
1021 CACGGTCCAC CTCTAGGCTC TGCAATACTT CAGAAGTTTG AGTCTGTGGT TTTCGGCACA
1081 TTCCTTCCTT TCTTTGTGGC TACCTCCGCG GAAGAGATCG ATACTTCGAT TTTACAGTCT
1141 TGGATAGATC TCAAGAGTAT TGTCATCCTA GTGTCTGTAT CGTTTATTGT CAAATTCGCT
1201 CTCACGACTC TCCCTGCCTT CTTATACGGT ATGCCAGCAA AGGATTGCAT TGCTCTGTCT
1261 CTAATTATGT CATTCAAAGG CATTTTCGAG TTCGGTGCTT ACGGTTATGC GTATCAAAGA
1321 GGGACTATTC GGCCGGTGAC CTTTACGGTT TTATCTTTGT ACATCTTGTT GAACTCTGCA
1381 GTCATACCTC CGCTCTTAAA ACGCATTTAT GATCCTTCGA GGATGTACGC AGGATACGAG
1441 AAGCGGAACA TGCTTCACAT GAAACCAAAC TCCGAGCTCA GGATTCTATC GTGTATCTAC
1501 AAAACAGACG ATATCCGTCC GATGATCAAT CTCCTTGAAG CTACTTGTCC CTCAAGAGAA
1561 AACCCTGTAG CTACTTACGT CCTTCACTTG ATGGAGCTAG TAGGACAAGC CAATCCAGTC
1621 CTCATCTCTC ACCGATTACA AACCCGTAAA AGTGAGAACA TGTCTTATAA TTCTGAAAAC
1681 GTCGTTGTCT CATTCGAACA GTTCCACAAC GATTTTTTCG GCTCTGTTTT CGTTAGCACT
1741 TACACGGCTT TATCCGTGCC GAAGATGATG CACGGAGACA TCTGTATGCT GGCTTTAAAC
1801 AACACAACGT CTCTCATCAT CCTTCCTTTT CACCAGACTT GGTCTGCTGA TGGATCAGCC
1861 ATTGTTTCAG ACAGCCTAAT GATCCGGCAA CTGAACAAGA GTGTCCTCGA CCTCTCTCCT
1921 TGCTCTGTCG GAATCTTCGT CTATCGAAGC AGTAATGGAC GGAGAACAAT CAAAGAGACA
1981 GCTGCAAACT TCTCATCTTA CCAAGTTTGT ATGCTCTTTC TTGGAGGTAA AGACGATAGA
2041 GAAGCTTTAT CACTCGCCAA GAGAATGGCT CGTGATTCAA GAATAACCAT CACAGTGGTT
2101 TCACTCATCT CTTCCGAACA GAGAGCGAAC CAAGCAACCG ACTGGGATCG CATGCTCGAC
2161 TTAGAACTAC TCAGAGACGT GAAAAGCAAC GTTCTAGCCG GTGCTGACAT TGTCTTCTCC
2221 GAGGAAGTAG TGAATGACGC AAATCAAACA TCACAATTGT TGAAATCTAT TGCGAATGAG
2281 TATGATCTGT TCATCGTCGG AAGAGAAAAA GGAAGGAAGA GTGTTTTCAC CGAGGGGCTT
2341 GAAGAATGGA GTGAGTTTGA AGAACTTGGT ATCATTGGAG ATCTCTTGAC TTCACAGGAT
2401 CTAAATTGTC AAGCTTCTGT GTTGGTGATA CAACAGCAAC AACAGATGAT CTAG
|
| |
|
Predicted Protein Sequence (817 aa):
1 MEFNGDRIPY LRDTWRDANM ICGILPINPS SSGLWPSPKL PDPQANIEFW NYMFPHVQII
61 FLIVTILWQF FHFFLRRLGM IRFTSHMLTG ILLSKSFLKE NTPARKFLST EDYKETLFGL
121 VGACSYMMFW FLMGVKMDLS LIRSTGRKAV AIGLSSVLLS ITVCALIFFL ILRDVGTKKG
181 EPVMSFFEII FIYLIQCLSS FPVIGNLLFE LRLQNSELGR LAMSSAVISD FSTSILSAVL
241 VFLKELKDDK SRLGSVFIGD VIVGNRPMKR AGTVVLFVCF AIYIFRPLMF FIIKRTPSGR
301 PVKKFYIYAI IILVFGSAIL ADWCKQSIFI GPFILGLAVP HGPPLGSAIL QKFESVVFGT
361 FLPFFVATSA EEIDTSILQS WIDLKSIVIL VSVSFIVKFA LTTLPAFLYG MPAKDCIALS
421 LIMSFKGIFE FGAYGYAYQR GTIRPVTFTV LSLYILLNSA VIPPLLKRIY DPSRMYAGYE
481 KRNMLHMKPN SELRILSCIY KTDDIRPMIN LLEATCPSRE NPVATYVLHL MELVGQANPV
541 LISHRLQTRK SENMSYNSEN VVVSFEQFHN DFFGSVFVST YTALSVPKMM HGDICMLALN
601 NTTSLIILPF HQTWSADGSA IVSDSLMIRQ LNKSVLDLSP CSVGIFVYRS SNGRRTIKET
661 AANFSSYQVC MLFLGGKDDR EALSLAKRMA RDSRITITVV SLISSEQRAN QATDWDRMLD
721 LELLRDVKSN VLAGADIVFS EEVVNDANQT SQLLKSIANE YDLFIVGREK GRKSVFTEGL
781 EEWSEFEELG IIGDLLTSQD LNCQASVLVI QQQQQMI
›› Fasta: All CHX Protein Sequences
|
| |
Back to the Top · Last Revision: October 16, 2006 |
