| |
|
AtCHX06a / At1g08140 ›› ARAMEMNON · TAIR · PLANTS T · MIPS · TIGR
|
| |
|
Exon/Intron Map (from TIGR):
|
| |
|
Sequences ›› full cDNA [ Riken ] · partial [ Sze Lab ] · BAC T6D22 [ ATG-STOP: 110969 - 108101 ]
|
| |
|
Genomic DNA (3869 bp):
Coding sequence -- confirmed by cDNA (full-length Riken and partial Sze Lab) -- in blue.
Start: 500 bp before ATG; End: 500 bp after STOP
1 tccattttcc tttgctatat tatttggttt aatttgcatg cttagctgtt tgaatgactt
61 aatttgtatg gtgattttaa agtataagtt cctatttcac caaacataga aaaaattgtc
121 aaaacaaaaa tatatatatc cctgagaaag tgtgcaagtg gatgcaaaat tccctaaata
181 tatatcgtta tatgtatagc tttggcgttg ttgattggtg aaatagacga tgtacaatca
241 tacgtgtgct aatgttgaca aggaacaaga gatggagaag aatgaagcta taaaaagaaa
301 acaaaatggg taaatattaa ctgtacctga gatgcgtatc tgttgtttgc tggttattcg
361 accttaatta gtcaacgttt ataacaaaac catccctagt cttcttcttt cccaatcgaa
421 ttacaaaccc taaatcattc cattagatct tcttgatccc taagcaagtc tcttcgttaa
481 cttttgtctt tctccttaaa ATGGCTACAG AGGAGATAGA CATGAGTTAT TGGGACGTGT
541 CATGGGGAGA ATTCAATGAA GACAAGAACT CGTCTATCTT CTGCGAGTCA CACCCTCACA
601 TAGTAAATTC GCACGGGATA TGGGAGGTTA TGACTTTCAA GAGAGGGATG AACTTCTGGG
661 AATATCCGCT CCCGAATCTC GAGATCTTAA TCTTTTCTAC TTTTTTTATA TGGCGGCTTC
721 TCGACATCTC ATTCAACAAA ATTGGTCTTC GAGTACCTAG ATTCACATAT ATGATGATCg
781 tgagttttct taatctccct cttccctcca cgttttaaat tttaaaatca gtacggtgca
841 tattcctaaa cgttgtaatg ccttgttgtt gaagGCAGGG ATAATTTTAG GTCAAACTTG
901 CCATTTCAGC AACAAGTCTT GGATCCATGA CATTTTTTTC CCTGATGATA ACCGACCAAA
961 GGTGGCCGAG ACCCTAGGGG CTTTCGGCTT CGTTTTATAT TGGTTCCTCA AAGGTGTGAC
1021 CATGGATGCC GAATTGCCAT TTAGGACGGA GAAAAGGTCT AGTGTGATCG GATTCATTAC
1081 AGTAATTATA CCCTTGATTT GTGGCAGCCT CACTTTTAGA TATAGAGAAC GAAGAGGGGA
1141 CTCAAGCATA TTAAGGATGG AATACAGGTT GATCATATTC TTGCAAAGCA TATCCGCGTT
1201 CACGAGCATC GACACACTCC TAAAAGACCT CCAGATCAAA CACTCAGAGT TTGGGAGGAT
1261 AGCCCTCTCT GGGGCTATGG TGACTGACAT GTTGGCTTTT GGTGTAACAT TTTTTAATGC
1321 AATCTACTAC GAAAAATTGT ACGGCTTCAT GCAAACCGTA GGTTTCTGCC TCTTTGTCGT
1381 CGTTATGATA TGCGTTGTGC GGCCGGCTAT GTATTGGGTG ATCAAGCAGA CTCCAGAAGG
1441 GAGGCCGGTC AAGGATTTCT ACCTCTACTC GATTTTTGGG ATTGCTTTCG CCTGCTTCAC
1501 TTTTTTTAAC AAGGTTATTC ATCTTTTTGG ACCCGCGGGA TCATTTGTTT TCGGCTTGAC
1561 GGTTCCAAAT GGATATCCTT TAGGTACTAC TTTGATTCAA AAGTTTGAGA GCTTTAATCT
1621 TGGCTCTATT TTGCCACTCT TTGGATCATT AACCATGATG CAAGTAGATC TCTTACGGTT
1681 GTTCAAAGAG AGTGGAGATT TAATACGGAT GGAGGGTCAA ATCTATGAGG TCATTTCCTT
1741 TATTCTTTTG GTGAATACCA CAAAATTCGT TGTTACCACC ATAACCGCGT ATGCTTTTAA
1801 AATGCCCTTG AGAGACTCTT TTGCTTTAGC CCTTGTGCTT AGTAATAAGG GGATCTTCGA
1861 GCTCGCCTAC TACACGTACG CGGTTGAATT AAAGgtgcgt acaattaaac tcttctatat
1921 atatttaaag tcagaagaat tagtttattt tcataaaaat taatcaaatc tttggacatg
1981 tttcacagCT AATAAGGCCA GAGGTTTTCA CAATCCTAGC TGCCTACACC CTCTTGAACT
2041 CTATCTTTAT ACCAATGCTC TTGGAGCTCG TGCATGACCC AACCAAAAGA TTCAGATGCT
2101 ACCGAAAAAG GAATTTGGGC ATCTTGAAAG ACGGTGCGGC TCTCCAATGT CTTATGTGCG
2161 TCTACAGACC TGATCACATA ACTTCCATGA CCGACCTCTT GGAAACTTTT AGCCCATCAC
2221 AAGATTCCCC AATGGCGTGT AACATACTTC ACCTCGTCGA GCTTGTGGGT CAAGCCAATC
2281 CTATGTTCAT TTCCCACCAG TTGCAAAAAC CAGAGCCCGG AAGTACTTCT CTGTCTGACA
2341 ATGTCATAAT CTCCTTCCGT GGCTTCCAAA GACAATTCTT TGAATACACA TCGTTGGATA
2401 TTTTCACTTC CGTCTCCGTG TCCCAACACA TGCATGAGGA CATTTGTTGG CTAGCCCTAT
2461 CCAGAAGCCT ATCTTTGATT GTGCTTCCTT TCCACCGAAC CTGGTCCGTT GATCGATCCA
2521 CGGTTATCTC CAACGATGAT AATCTGAGAA TGCTCAACGT TAACGTCCTG AGACGAGCCC
2581 CATGCTCTGT TGGAATCTTC GTCTATCGCA AGCCCATCGT TGAATCTCAT ATGGCTAAGT
2641 CCCACAGCAA Ggtgcttttc attttatttt gaaaactaat taattatccg tttgggtacg
2701 tgaaaataca aatttcagaa ttttataaaa tctaaaagaa tatttttgca acgtctaaat
2761 gaaattaaat gctgaaagaa aatcttttca ttttccttta ccatttatga tgaacaaaag
2821 aaatggtact aatatattag catttttaac ctgataaaac tctcatcttt gcagATATGT
2881 TTGATTTTTA ACGGTGGAAA AGACGATAGA GAAGCTTTGG CGATAACAAA TCGAATGAGA
2941 CTGACAGAAA AACGAACAAG GCTAACGATC ATAAGATTCA TTCCAAAATC TTCTGAAATG
3001 GATAACGATG AGTGGGAGCA ACAGCAATCG ATTAACCTAA AGGAGTCCGT GACTAGCATC
3061 GTTGGGTCCA ACATCAAAGA AAATGATGCC AAGGTGACAT ATATCGATAA GGCGGTTTCT
3121 GATGGATCTG AGACCTCAAG AATCTTACGA GCAATGGCAA ATGATTATGA CTTGTTTATC
3181 GTTGGAAGCG GCAGCGGAAT AGGAACTGAG GCTACTAGCG GAATTAGTGA ATGGACAGAG
3241 TTCAATGAAT TGGGACCTAT TGGAGATTTA TTAGCATCAC ATGAATATCC TTCAAGTGCA
3301 TCAGTGTTGG TTGTTCAAAA ACAAGTGTAC ATTCATCATA CAAAAAGCCA AAGGAGAAAA
3361 TCTTTCTAAg aaataatgcg agatatgttc aatgctcagc ttttcaatgt tgtatttctc
3421 tacatcaata aacattagtt ttaggctgct tgaagttatg gagtaattga ttcgagtttc
3481 ttctggatat gatgatataa acttcacgat ttttttaatc aaattttgag ttaacaagat
3541 tagagtaatt tcttgtggca gtgcctgctc tatgataacg ccttccaact atagctgcct
3601 ttgttatcac aattcaaaaa tatatattct cttgtagtaa cagggtctgt ttaacataca
3661 cactttgtca cgttataatt aagtttagta tgtgttagag atatcagagg gaacagagca
3721 aaatactctg tttttctcaa caaaaagaga ttttggtacc taacagagta ctctgctctg
3781 ttccctttga taaaagattg aatttgaggt cttaattaat ggatcatctt attaaaaatg
3841 ggtaaagcgt ttatttagac tgcctaaag
|
| |
|
Coding Sequence (2457 bp):
1 ATGGCTACAG AGGAGATAGA CATGAGTTAT TGGGACGTGT CATGGGGAGA ATTCAATGAA
61 GACAAGAACT CGTCTATCTT CTGCGAGTCA CACCCTCACA TAGTAAATTC GCACGGGATA
121 TGGGAGGTTA TGACTTTCAA GAGAGGGATG AACTTCTGGG AATATCCGCT CCCGAATCTC
181 GAGATCTTAA TCTTTTCTAC TTTTTTTATA TGGCGGCTTC TCGACATCTC ATTCAACAAA
241 ATTGGTCTTC GAGTACCTAG ATTCACATAT ATGATGATCG CAGGGATAAT TTTAGGTCAA
301 ACTTGCCATT TCAGCAACAA GTCTTGGATC CATGACATTT TTTTCCCTGA TGATAACCGA
361 CCAAAGGTGG CCGAGACCCT AGGGGCTTTC GGCTTCGTTT TATATTGGTT CCTCAAAGGT
421 GTGACCATGG ATGCCGAATT GCCATTTAGG ACGGAGAAAA GGTCTAGTGT GATCGGATTC
481 ATTACAGTAA TTATACCCTT GATTTGTGGC AGCCTCACTT TTAGATATAG AGAACGAAGA
541 GGGGACTCAA GCATATTAAG GATGGAATAC AGGTTGATCA TATTCTTGCA AAGCATATCC
601 GCGTTCACGA GCATCGACAC ACTCCTAAAA GACCTCCAGA TCAAACACTC AGAGTTTGGG
661 AGGATAGCCC TCTCTGGGGC TATGGTGACT GACATGTTGG CTTTTGGTGT AACATTTTTT
721 AATGCAATCT ACTACGAAAA ATTGTACGGC TTCATGCAAA CCGTAGGTTT CTGCCTCTTT
781 GTCGTCGTTA TGATATGCGT TGTGCGGCCG GCTATGTATT GGGTGATCAA GCAGACTCCA
841 GAAGGGAGGC CGGTCAAGGA TTTCTACCTC TACTCGATTT TTGGGATTGC TTTCGCCTGC
901 TTCACTTTTT TTAACAAGGT TATTCATCTT TTTGGACCCG CGGGATCATT TGTTTTCGGC
961 TTGACGGTTC CAAATGGATA TCCTTTAGGT ACTACTTTGA TTCAAAAGTT TGAGAGCTTT
1021 AATCTTGGCT CTATTTTGCC ACTCTTTGGA TCATTAACCA TGATGCAAGT AGATCTCTTA
1081 CGGTTGTTCA AAGAGAGTGG AGATTTAATA CGGATGGAGG GTCAAATCTA TGAGGTCATT
1141 TCCTTTATTC TTTTGGTGAA TACCACAAAA TTCGTTGTTA CCACCATAAC CGCGTATGCT
1201 TTTAAAATGC CCTTGAGAGA CTCTTTTGCT TTAGCCCTTG TGCTTAGTAA TAAGGGGATC
1261 TTCGAGCTCG CCTACTACAC GTACGCGGTT GAATTAAAGC TAATAAGGCC AGAGGTTTTC
1321 ACAATCCTAG CTGCCTACAC CCTCTTGAAC TCTATCTTTA TACCAATGCT CTTGGAGCTC
1381 GTGCATGACC CAACCAAAAG ATTCAGATGC TACCGAAAAA GGAATTTGGG CATCTTGAAA
1441 GACGGTGCGG CTCTCCAATG TCTTATGTGC GTCTACAGAC CTGATCACAT AACTTCCATG
1501 ACCGACCTCT TGGAAACTTT TAGCCCATCA CAAGATTCCC CAATGGCGTG TAACATACTT
1561 CACCTCGTCG AGCTTGTGGG TCAAGCCAAT CCTATGTTCA TTTCCCACCA GTTGCAAAAA
1621 CCAGAGCCCG GAAGTACTTC TCTGTCTGAC AATGTCATAA TCTCCTTCCG TGGCTTCCAA
1681 AGACAATTCT TTGAATACAC ATCGTTGGAT ATTTTCACTT CCGTCTCCGT GTCCCAACAC
1741 ATGCATGAGG ACATTTGTTG GCTAGCCCTA TCCAGAAGCC TATCTTTGAT TGTGCTTCCT
1801 TTCCACCGAA CCTGGTCCGT TGATCGATCC ACGGTTATCT CCAACGATGA TAATCTGAGA
1861 ATGCTCAACG TTAACGTCCT GAGACGAGCC CCATGCTCTG TTGGAATCTT CGTCTATCGC
1921 AAGCCCATCG TTGAATCTCA TATGGCTAAG TCCCACAGCA AGATATGTTT GATTTTTAAC
1981 GGTGGAAAAG ACGATAGAGA AGCTTTGGCG ATAACAAATC GAATGAGACT GACAGAAAAA
2041 CGAACAAGGC TAACGATCAT AAGATTCATT CCAAAATCTT CTGAAATGGA TAACGATGAG
2101 TGGGAGCAAC AGCAATCGAT TAACCTAAAG GAGTCCGTGA CTAGCATCGT TGGGTCCAAC
2161 ATCAAAGAAA ATGATGCCAA GGTGACATAT ATCGATAAGG CGGTTTCTGA TGGATCTGAG
2221 ACCTCAAGAA TCTTACGAGC AATGGCAAAT GATTATGACT TGTTTATCGT TGGAAGCGGC
2281 AGCGGAATAG GAACTGAGGC TACTAGCGGA ATTAGTGAAT GGACAGAGTT CAATGAATTG
2341 GGACCTATTG GAGATTTATT AGCATCACAT GAATATCCTT CAAGTGCATC AGTGTTGGTT
2401 GTTCAAAAAC AAGTGTACAT TCATCATACA AAAAGCCAAA GGAGAAAATC TTTCTAA
|
| |
|
Protein Sequence (818 aa):
1 MATEEIDMSY WDVSWGEFNE DKNSSIFCES HPHIVNSHGI WEVMTFKRGM NFWEYPLPNL
61 EILIFSTFFI WRLLDISFNK IGLRVPRFTY MMIAGIILGQ TCHFSNKSWI HDIFFPDDNR
121 PKVAETLGAF GFVLYWFLKG VTMDAELPFR TEKRSSVIGF ITVIIPLICG SLTFRYRERR
181 GDSSILRMEY RLIIFLQSIS AFTSIDTLLK DLQIKHSEFG RIALSGAMVT DMLAFGVTFF
241 NAIYYEKLYG FMQTVGFCLF VVVMICVVRP AMYWVIKQTP EGRPVKDFYL YSIFGIAFAC
301 FTFFNKVIHL FGPAGSFVFG LTVPNGYPLG TTLIQKFESF NLGSILPLFG SLTMMQVDLL
361 RLFKESGDLI RMEGQIYEVI SFILLVNTTK FVVTTITAYA FKMPLRDSFA LALVLSNKGI
421 FELAYYTYAV ELKLIRPEVF TILAAYTLLN SIFIPMLLEL VHDPTKRFRC YRKRNLGILK
481 DGAALQCLMC VYRPDHITSM TDLLETFSPS QDSPMACNIL HLVELVGQAN PMFISHQLQK
541 PEPGSTSLSD NVIISFRGFQ RQFFEYTSLD IFTSVSVSQH MHEDICWLAL SRSLSLIVLP
601 FHRTWSVDRS TVISNDDNLR MLNVNVLRRA PCSVGIFVYR KPIVESHMAK SHSKICLIFN
661 GGKDDREALA ITNRMRLTEK RTRLTIIRFI PKSSEMDNDE WEQQQSINLK ESVTSIVGSN
721 IKENDAKVTY IDKAVSDGSE TSRILRAMAN DYDLFIVGSG SGIGTEATSG ISEWTEFNEL
781 GPIGDLLASH EYPSSASVLV VQKQVYIHHT KSQRRKSF
›› Fasta: All CHX Protein Sequences
|
| |
Back to the Top · Last Revision: October 16, 2006 |
