| |
|
AtCHX09 / At5g22910 ›› ARAMEMNON · TAIR · PLANTS T · MIPS · TIGR
|
| |
|
Exon/Intron Map (from TIGR):
|
| |
|
Sequences ›› partial cDNA [ Sze Lab ] · PAC MRN17 [ ATG-STOP: 58313 - 55411 ]
|
| |
|
Genomic DNA (3903 bp):
Coding sequence -- confirmed by cDNA from Sze Lab -- in blue.
Start: 500 bp before ATG; End: 500 bp after STOP
1 actcttttat aaattctact aaaacacact atggaatact tttttttttt tttgaagttt
61 gatattagta gtgttaaagt tgtgggctaa gttcttgagt tagattagta ggtagtgtca
121 actcaatatt tgatcttcaa tgggcttaga ttgggcttat cttttgggtt tgttataaaa
181 taagtatttg gtaaaatggg ttagtttctt tttctttttt tggtcaacca aaatggtcaa
241 gttttaggaa aggattagag tgcctaagta tcatcattta tttgttgata agtttgacca
301 aaacgtaaca aaattatttc gcaaccaaaa agtactagtc aaaggggggc gccaactatt
361 tgataaacaa cagcaactgt ttttttttta aaacaaaccg ttacgttgtt gaatattttg
421 acgttaagaa taaattatca gcgaaaaaaa acgaaatcga tcttttacaa gtttgacaaa
481 agcatatctt cgtcatcatc ATGACCGATT CTCAAGCACT AGTTCCTGGG CCTTCACCGC
541 CTCATAGCAA AGCTGAAATT TGTTACGGAG CTACTTTTTT CAACATCTCT TCTTATGGAA
601 TCATGGAAAA ATATGAAACT CCTACTGTTA TCTTCGGATA TGCATTGCCT CTCCTTGAGC
661 TGCAGATCAT TCTCATCTTC GTTTGCATCG TCTTATCTCA TATGTTCCTC AGACGTATTG
721 GCATACCACG GTTCGTCTCC AACATACTTg taagttaaga aaaacgtcca caactgtcaa
781 tttcttgtat cgcaagtacc aaacgcttgg tttcttgtac tgcaagtaac aatttttttt
841 tttttttgaa ctagGCTGGT TTGATTCTTG GACCTCAGCT GCTTGATCTT CTGGAGTATT
901 CATCGGACCG ATTATCGTTA GACATCCCCG GAAACGTAGC GTTGGAAGGT GTGGCCAGGC
961 TTGGGTTGGT AATGTTCACG TTCTTAATGG GCGTGAAGAC CAACAAGAGA GCGGTGTATC
1021 AAATCGGTAA ACGTCCGATA GTAATCGCGG TTTCGTCCTT TTTCGTGACT ATGATCAGCG
1081 GGTTAGCCTT CAGAAACTTC CGTCTCGACA AGGTCGACCC TCTTTATATG CCTCTGAGGC
1141 TAGCCCCAAC AGAACGCTCC GTGATTGTAT CGATTCAAGC AGTAACGCTG TTACCGGTCA
1201 TAACCCACCT CGTATATGAG CTGAAGATGT CAAACTCCGA GCTCGGCCGC ATCGCCATAT
1261 CTACAGCCGC CGTCAGCGAT TTCCTTGGAT TTCTCACTCT AGTATGCATC TCCTACGTTG
1321 GAACATACAG gtatgtaaga cgtcgattaa tttaggaatc taattggtgc atttgcatac
1381 aaaactactt acctcattaa atatactttt gtagtaatca aagtctacaa atccggagac
1441 ctaaagcaat atatataatg ctctaaaact ggttaaaagt ttgatcaacg aaaagttacc
1501 gttttattgt ctataaagca atactaattg ttatctacac aatagacggc accggagtgt
1561 ttgattagta atgtatatct actatctaac gaacattatt tgctataata gtttgaaacg
1621 gtctgcagGT ATGTATCGCC CGGAATAGCC AACCGCGACA TAGTGGCATT GATCATCTTA
1681 GTCCTTGTGA TCCTATTCAT CTTCAAGCCA ATGGCACAAC GAATAGTGGA CATGACCCCA
1741 GAAGGCAAGC CCGTACCGAA AGTCTACTTA TACGTAACAA TCCTGACCGC AATCGCCGCG
1801 AGTATATACT TAAGTGTTTT CAACCAAATG TACATTCTAG GAGCTTTATT GGTGGGGTTG
1861 GCAATCCCAG ACGGTCCGCC TCTGGGATCT GCGTTAGAGG CAAGGTTCGA GAGCTTGGTT
1921 ACAAACATAT TTTTCCCTAT TTCAATCGCG GTCATGGCGA TGAAAGCTGA CGTTGTAAGA
1981 GCATTGTATT CGTTCGATGA CATTTCCTTT AACATACTTC TACTGGGTCT TACAGTGGTA
2041 GTGAAATGGA CTGCCTCTTT TGTACCTTGC TTGATCTTCT GCGAGTTACC TACTAGAGAA
2101 TCCGTTATCA TCGCCACTAT CATGAACTAT AAGGGTTTTG TTGACTTATG CTTCTTCGAT
2161 GTCGCCTTAA GAAGAAGGgt aaaataatct tcatctaacc tacactctac atgtatatat
2221 attgcatcat atggttttga attaatggtt gaatgttttt tgttttcttt aacagAATTT
2281 GTCGCGAGCA ACGTACACGG TCATGATTAT TTACGTGCTA TTGAACGCGG GGATTTTGCC
2341 TACGATTATA AAAGCACTAT ATGATCCAAA GAGGAAGTAT ATTGGATATG TCAAGAGAGA
2401 CATTATGCAT CTTAAAACAA ACTCAGATCT CAAGATTCTA ACTTGTTTGC ACAAGCCTGA
2461 CAACATCTCA GGTGCGATCT CGCTACTTGA ATTGCTTTCC TCGCCGCTAA ACAACGATAA
2521 CAAAGACAGA GGAGTCATTG CTGTCACGGC GTTACACCTA GTGAAACTCG CAGGACGTAC
2581 GTTTCCCATC TTGATACCTC ATGACAAGCG GTCTAAAGCG CGGTTGCTTC AAAACTCTTA
2641 CATACAAACA ATGATGCTCG CGTTCACCGA GTTTCAACAA GAGAATTGGG AATCTACCAC
2701 TGTTAGTTCC TTCACAGCTT ATTCTCATGA GAACCTAATG GATCAAGACA TTTGCAATCT
2761 TGCTTTAGAC CACCTCACAT CGATGATCAT TGTCCCTTCG GGACGAAAAT GGTCACCCGA
2821 TGGAGAATAT GAATCAGACG ATATTATGAT CAGACGTGTT AATGAATCTC TCCTTGACCT
2881 CGCTCCATGT TCTGTCGGCA TACTTAACTA CCGAGGATAT AATAAAGGTA AGAAAAAGAC
2941 CAACAGTATC ATTAACGTTG GTGTGATCTT CATTGGTGGT AAAGATGATC GTGAGGCGCT
3001 TTCCCTTGCG AAATGGATGG GACAGAACTC GAGAGTGTGT CTTACTGTTA TCAGATTTTT
3061 GTCTGGTCAA GAACTAGATA AGTCCAAGAA TTGGGATTAC CTTGTTGACG ACGAGGTCTT
3121 GAATGATTTG AAAGCGACAT ATTCATTGGC CAACAATTTT AACTATATGG AGAAGGTAGT
3181 CAACGGTGGA CCTGCGGTGG CCACCACCGT TAGATTGGTG GCGGAAGACC ATGATTTGAT
3241 GATTGTAGGA AGAGATCACG AAGATTATTC GCTGGACTTA ACAGGGTTGG CACAGTGGAT
3301 GGAGCTTCCG GAGTTAGGAG TCATCGGAGA TTTGCTTGCA TCCAAAGATT TAAGAGCTAG
3361 GGTTTCTGTT TTAGTAGTTC AACAACAACA ACAACATGGA TGAgtgtaac atatgtcagt
3421 gaatgatctc aaaaaaaaaa attgaattat actcgcatca tgggtaaatg ttagaattta
3481 catttgacgt ggaaatagat ttaatataat tgatctaaac aacattggtt aatccattca
3541 ttaccaaatt gtttttgagt aagaaactca tgcatatatt gttcctaaaa tagtatatat
3601 caaatcaata atccggtatt tttgagagat gagttgttct gctctaacat agtatacaaa
3661 gatgagtttg acgcagttgg aatacattga taagccagtt aattattgat ttatctaaat
3721 ttagtgttca ttaaaattgt attttaaatg tatgcaaata atccatttcg tactacttag
3781 cacagttaat ttgcacagaa ttattccaaa tatctaaatc ttggcgcttt gttgaagcaa
3841 acactactgc taaaaaatta aaaaattaaa aaaataataa taataataat aaataaataa
3901 caa
|
| |
|
Coding Sequence (2403 bp):
1 ATGACCGATT CTCAAGCACT AGTTCCTGGG CCTTCACCGC CTCATAGCAA AGCTGAAATT
61 TGTTACGGAG CTACTTTTTT CAACATCTCT TCTTATGGAA TCATGGAAAA ATATGAAACT
121 CCTACTGTTA TCTTCGGATA TGCATTGCCT CTCCTTGAGC TGCAGATCAT TCTCATCTTC
181 GTTTGCATCG TCTTATCTCA TATGTTCCTC AGACGTATTG GCATACCACG GTTCGTCTCC
241 AACATACTTG CTGGTTTGAT TCTTGGACCT CAGCTGCTTG ATCTTCTGGA GTATTCATCG
301 GACCGATTAT CGTTAGACAT CCCCGGAAAC GTAGCGTTGG AAGGTGTGGC CAGGCTTGGG
361 TTGGTAATGT TCACGTTCTT AATGGGCGTG AAGACCAACA AGAGAGCGGT GTATCAAATC
421 GGTAAACGTC CGATAGTAAT CGCGGTTTCG TCCTTTTTCG TGACTATGAT CAGCGGGTTA
481 GCCTTCAGAA ACTTCCGTCT CGACAAGGTC GACCCTCTTT ATATGCCTCT GAGGCTAGCC
541 CCAACAGAAC GCTCCGTGAT TGTATCGATT CAAGCAGTAA CGCTGTTACC GGTCATAACC
601 CACCTCGTAT ATGAGCTGAA GATGTCAAAC TCCGAGCTCG GCCGCATCGC CATATCTACA
661 GCCGCCGTCA GCGATTTCCT TGGATTTCTC ACTCTAGTAT GCATCTCCTA CGTTGGAACA
721 TACAGGTATG TATCGCCCGG AATAGCCAAC CGCGACATAG TGGCATTGAT CATCTTAGTC
781 CTTGTGATCC TATTCATCTT CAAGCCAATG GCACAACGAA TAGTGGACAT GACCCCAGAA
841 GGCAAGCCCG TACCGAAAGT CTACTTATAC GTAACAATCC TGACCGCAAT CGCCGCGAGT
901 ATATACTTAA GTGTTTTCAA CCAAATGTAC ATTCTAGGAG CTTTATTGGT GGGGTTGGCA
961 ATCCCAGACG GTCCGCCTCT GGGATCTGCG TTAGAGGCAA GGTTCGAGAG CTTGGTTACA
1021 AACATATTTT TCCCTATTTC AATCGCGGTC ATGGCGATGA AAGCTGACGT TGTAAGAGCA
1081 TTGTATTCGT TCGATGACAT TTCCTTTAAC ATACTTCTAC TGGGTCTTAC AGTGGTAGTG
1141 AAATGGACTG CCTCTTTTGT ACCTTGCTTG ATCTTCTGCG AGTTACCTAC TAGAGAATCC
1201 GTTATCATCG CCACTATCAT GAACTATAAG GGTTTTGTTG ACTTATGCTT CTTCGATGTC
1261 GCCTTAAGAA GAAGGAATTT GTCGCGAGCA ACGTACACGG TCATGATTAT TTACGTGCTA
1321 TTGAACGCGG GGATTTTGCC TACGATTATA AAAGCACTAT ATGATCCAAA GAGGAAGTAT
1381 ATTGGATATG TCAAGAGAGA CATTATGCAT CTTAAAACAA ACTCAGATCT CAAGATTCTA
1441 ACTTGTTTGC ACAAGCCTGA CAACATCTCA GGTGCGATCT CGCTACTTGA ATTGCTTTCC
1501 TCGCCGCTAA ACAACGATAA CAAAGACAGA GGAGTCATTG CTGTCACGGC GTTACACCTA
1561 GTGAAACTCG CAGGACGTAC GTTTCCCATC TTGATACCTC ATGACAAGCG GTCTAAAGCG
1621 CGGTTGCTTC AAAACTCTTA CATACAAACA ATGATGCTCG CGTTCACCGA GTTTCAACAA
1681 GAGAATTGGG AATCTACCAC TGTTAGTTCC TTCACAGCTT ATTCTCATGA GAACCTAATG
1741 GATCAAGACA TTTGCAATCT TGCTTTAGAC CACCTCACAT CGATGATCAT TGTCCCTTCG
1801 GGACGAAAAT GGTCACCCGA TGGAGAATAT GAATCAGACG ATATTATGAT CAGACGTGTT
1861 AATGAATCTC TCCTTGACCT CGCTCCATGT TCTGTCGGCA TACTTAACTA CCGAGGATAT
1921 AATAAAGGTA AGAAAAAGAC CAACAGTATC ATTAACGTTG GTGTGATCTT CATTGGTGGT
1981 AAAGATGATC GTGAGGCGCT TTCCCTTGCG AAATGGATGG GACAGAACTC GAGAGTGTGT
2041 CTTACTGTTA TCAGATTTTT GTCTGGTCAA GAACTAGATA AGTCCAAGAA TTGGGATTAC
2101 CTTGTTGACG ACGAGGTCTT GAATGATTTG AAAGCGACAT ATTCATTGGC CAACAATTTT
2161 AACTATATGG AGAAGGTAGT CAACGGTGGA CCTGCGGTGG CCACCACCGT TAGATTGGTG
2221 GCGGAAGACC ATGATTTGAT GATTGTAGGA AGAGATCACG AAGATTATTC GCTGGACTTA
2281 ACAGGGTTGG CACAGTGGAT GGAGCTTCCG GAGTTAGGAG TCATCGGAGA TTTGCTTGCA
2341 TCCAAAGATT TAAGAGCTAG GGTTTCTGTT TTAGTAGTTC AACAACAACA ACAACATGGA
2401 TGA
|
| |
|
Protein Sequence (800 aa):
1 MTDSQALVPG PSPPHSKAEI CYGATFFNIS SYGIMEKYET PTVIFGYALP LLELQIILIF
61 VCIVLSHMFL RRIGIPRFVS NILAGLILGP QLLDLLEYSS DRLSLDIPGN VALEGVARLG
121 LVMFTFLMGV KTNKRAVYQI GKRPIVIAVS SFFVTMISGL AFRNFRLDKV DPLYMPLRLA
181 PTERSVIVSI QAVTLLPVIT HLVYELKMSN SELGRIAIST AAVSDFLGFL TLVCISYVGT
241 YRYVSPGIAN RDIVALIILV LVILFIFKPM AQRIVDMTPE GKPVPKVYLY VTILTAIAAS
301 IYLSVFNQMY ILGALLVGLA IPDGPPLGSA LEARFESLVT NIFFPISIAV MAMKADVVRA
361 LYSFDDISFN ILLLGLTVVV KWTASFVPCL IFCELPTRES VIIATIMNYK GFVDLCFFDV
421 ALRRRNLSRA TYTVMIIYVL LNAGILPTII KALYDPKRKY IGYVKRDIMH LKTNSDLKIL
481 TCLHKPDNIS GAISLLELLS SPLNNDNKDR GVIAVTALHL VKLAGRTFPI LIPHDKRSKA
541 RLLQNSYIQT MMLAFTEFQQ ENWESTTVSS FTAYSHENLM DQDICNLALD HLTSMIIVPS
601 GRKWSPDGEY ESDDIMIRRV NESLLDLAPC SVGILNYRGY NKGKKKTNSI INVGVIFIGG
661 KDDREALSLA KWMGQNSRVC LTVIRFLSGQ ELDKSKNWDY LVDDEVLNDL KATYSLANNF
721 NYMEKVVNGG PAVATTVRLV AEDHDLMIVG RDHEDYSLDL TGLAQWMELP ELGVIGDLLA
781 SKDLRARVSV LVVQQQQQHG
›› Fasta: All CHX Protein Sequences
|
| |
Back to the Top · Last Revision: October 16, 2006 |
