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AtCHX10 / At3g44930 ›› ARAMEMNON · TAIR · PLANTS T · MIPS · TIGR
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Exon/Intron Map (revised by K. Bock):
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Sequences ›› partial cDNA [ Sze Lab ] · BAC F28D10 [ ATG-STOP: 45277 - 42663 ]
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Genomic DNA (3615 bp):
Revised coding sequence -- confirmed by cDNA from Sze Lab -- in blue.
Start: 500 bp before ATG; End: 500 bp after STOP
1 attttagggt ggtcactaat tttataagta ttattagatc ggaaaaaata ttatcaaggg
61 aaggaaagaa aaaaaattgt aaacttagat tgaagcagtt ggaaaatatt tctagactat
121 aaacttgggt ccccaaacag aaactttgag ctaattttgg ctcaaacctc caagcttgca
181 attttattta gcaaagcaaa ttcttcatgt tctagatttt acgtttttga acaaacaaaa
241 tggaaaaaaa aaacagttac tctctggata tatatatttt ttttttctaa attggaaagt
301 tacatttgtt ccagagagat tatgacagct atttaccaaa gaccagacaa aaacaacaca
361 aaaaactaac aagactcttt tcaaaaccca aattcaaaga atgaacactt ttttttcttc
421 ttttccagag acttaaactt tataacacaa aaaaaaagca ttttcatccc caagttttgc
481 taagttattg gcttatattc ATGAACACGA CTACTTACAT TGGGGATTGT CGAATATCAT
541 TCTTCAACAT ATCTTCCCAG GGATTTTGGG ATAACCTAAA ATCGCCTGAT GTGGTTTTCG
601 GCTACTCGCT GCCTCTCCTA GAGATTCAGA TAATACTGAT ATTCTTCTGC ATTGTCATGT
661 CTCATATGTT CCTCAGATGC ATCGGCATTT CCCAAATCGC TTCATATATG ATTgtaagca
721 agttttccat atctaacttg gcaagcacac aagatatttc caattattag aactacaaaa
781 gtagatgtaa cttgacaagc acgtaaattg tttaagggac aaagaagatc atgcatgcgt
841 gctattgaag atatttttca gaaactgaaa tcatatatat aaatttatgt gcagGCTGGA
901 ATAGTTCTAG GGCCTCAGCT TTTTGATGTA CTAGAGAAAT CTTCAGGGAA ACTATCCGTG
961 GATCCTGCGT TGGATGGAAT CGCAGCGTTA AGATGCATCT CGGTGTTTGG AACACTAATG
1021 TTTACGTTTC TAATGACTGT TAGAACCAGC AGGCGAGTGG CGTTCCATAG CGGAAAATTG
1081 CCCGTTGTGA TCGGGATCGT GTCCTTCTTT GCTCCTCTGT TTGGTCTCGG TTTCCAGAAT
1141 TTTTTTTCTG ACAACATCGA CCCTCACTAC ATGCCTCTAA CTAAAGCCCT AGGTGAGCGC
1201 ACTGCGATTG TCATAACTCA ATCTTCGATA CTTTTGCCTT CCACTACATA TATCTTGCTA
1261 GAGCTCAAGA TCATCAACTC CGAGCTAGGT CGCCTTGCAT TGTCTGCATG TGTCATCAAC
1321 GACATCTTGG GGATTTTTTC CATGATAGTT GCCTCTATAC AAGCGACCTA CATTCATGTT
1381 TCACATGCAA CAGCCTATCG TGACACTGTC GCGGTGATCA TCTTTTTTCT CGTCGTCTTT
1441 CTTGTTTTTA AGCCTATGGT GCAATGGGTC ATAGACCGCA CACCGGAAGA CAAGCCAGTG
1501 GAGGATATGT ACATTCATGC CGTGATTATT ACCGCATTGG CTTCCGCTGC TTATTTTGTG
1561 TTTTTCAACA TGAAATATAT TTTAGGACCA TTAATGATTG GCATCATCAT ACCAGAGGGT
1621 CCACCATTAG GATCGGCTCT AGAGGCTAAG TTTGAGAGGC TCACAATGAA CGTGTTCTTA
1681 CCAATCTCAA TCACATTCAG CGCGATGAGA TGTGATGGAG CAAGGATCCT TAGCCAGTTC
1741 AATGACATCT TCTTCAACAT CTTCCTAACA TTTCTTATAC TTGTCATAAA ACTGGTCGCA
1801 TGCCTTGCAC CTTGCTTGTA CTACAAGTTA CCTCTCAGTG AATCCTTGGC TGTTTCCTTC
1861 ATCTTGAGCT ACAAAAGTTT TGCTGATTTT GTTCTCTATG AAGCTGTATT AGACGACACG
1921 gtaacctcct aactcgcaaa tagtcgatta ttggtatcat ttgccattaa tctaaacatt
1981 tttttatggt ttggttttgc agTACATATC GCAAGCCACT TACTCGTTCT TAATCTTATA
2041 TTCGCTACTA AATGCCGGGA TTGTCCCTAC TGTCTTAAGG AGGATGTACG ATCCAAGAAG
2101 AAAGTACGTT AATTACCAGA AAAGGGACAT ATTGCATCTA GAACGAAACT CAGATCTTCG
2161 AATTCTAACT TGTTTGCACA AACCAGAAAA CGTCTCAGAG ACCATAGCAT TCCTACAATT
2221 GTTGTCCTCA CCGAACCTAG ACTTCCCTAT CGCGGTTACA GTTCTCCACC TTGTGAAGCT
2281 CGTTGGTCAG ATAAACCCTA TCATAGTCTC ACACGACAAG AAATTGAAAC GGCTTAACAA
2341 AGACTCATAC ATCCATACCG CAAACCTTGC CTTTAGACAA TTCGTGTTAG AAAGCTTAGA
2401 GTCTGTAACC GTGACAACGT TCACTGCGTT CTCGCATGAA AACTTGATGC ACGAAGACAT
2461 TTGTACACTT GCACTTGACA AAACAACATC GATGATTGTC GTCCCATCGG GGAGGAAATG
2521 GACTGTAGAT GGGTTATTCG AGTCTGACAA CACTGCTATA AGACATCTAA ACCAGTCGTT
2581 ACTCGATCGT GCGCCTTGTT CTATCGGCAT ACTAGTAGAC CGTGGACAAT TCTCGCGAAA
2641 AAGTATTGTA ACGAGCAAAA AAAGGTACAT CATTGATGTT GGTGTGCTCT TCATTGGAGG
2701 CAAAGACGAT AGGGAAGCAC TATCATTGGT GAAGAGGATG AAAAATAACC CGAGGATCCG
2761 TGTAACCGTG ATCCGACTCG TCTTCGACCA TGAAATAGAG TCAGATTGGG ATTATATTCT
2821 TGATAACGAA GGCTTAAAGG ATTTGAAGAG TACTGAAGAC AACAAAGATA TTGATTATAT
2881 AGAGAGGATT GTGACTAGTA GTGTTGAGGT AGTCAAAGCT GTCCAATTGC TTGCAGAAGA
2941 GTACGATCTA ATGGTGGTCG GGAGAGATCA TGATATGACA TCACAAGACT TATCAGGACT
3001 AATGGAATGG GTCGAACTAC CAGAGTTAGG TGTCATCGGG GATTTGCTGG CGGCTAGAGA
3061 TCTAAGCTCT AAGGTTTCGG TTTTAGTAGT TCAACAACAA CAACAACGAA CGTGAcatgt
3121 tttgaccgca agactgtgtg tattcattta gggcaaactt ttagaaaatt ttaagatgta
3181 taaatagtca ttcatttgtt taaatataat atgcgtatat attcatacaa atttttttac
3241 attatataca aattaaacat acttagaatc cataagaagg aataaccata aactttgatt
3301 cagattgtta tacttcctcc agctcaactc tgtgtttctc aatccgtcct ttcactcttt
3361 cactctttca ctagcttctg gtattcttag aacattaggt tgcccaaagc tgacactggt
3421 ctgtaaagtc gaagcgactc catgtttatc ttcaagaaag aaacatgttt cttcaactgc
3481 aagaaacatt gtctaagaag aaaccctttg aaaatattaa aaacattacc agttctagtt
3541 gggagaaagt ttctgaattt ggggttttat attatatctt ttgttagtct ttggaaatct
3601 atctgttcat ttcca
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Revised Coding Sequence (2352 bp):
1 ATGAACACGA CTACTTACAT TGGGGATTGT CGAATATCAT TCTTCAACAT ATCTTCCCAG
61 GGATTTTGGG ATAACCTAAA ATCGCCTGAT GTGGTTTTCG GCTACTCGCT GCCTCTCCTA
121 GAGATTCAGA TAATACTGAT ATTCTTCTGC ATTGTCATGT CTCATATGTT CCTCAGATGC
181 ATCGGCATTT CCCAAATCGC TTCATATATG ATTGCTGGAA TAGTTCTAGG GCCTCAGCTT
241 TTTGATGTAC TAGAGAAATC TTCAGGGAAA CTATCCGTGG ATCCTGCGTT GGATGGAATC
301 GCAGCGTTAA GATGCATCTC GGTGTTTGGA ACACTAATGT TTACGTTTCT AATGACTGTT
361 AGAACCAGCA GGCGAGTGGC GTTCCATAGC GGAAAATTGC CCGTTGTGAT CGGGATCGTG
421 TCCTTCTTTG CTCCTCTGTT TGGTCTCGGT TTCCAGAATT TTTTTTCTGA CAACATCGAC
481 CCTCACTACA TGCCTCTAAC TAAAGCCCTA GGTGAGCGCA CTGCGATTGT CATAACTCAA
541 TCTTCGATAC TTTTGCCTTC CACTACATAT ATCTTGCTAG AGCTCAAGAT CATCAACTCC
601 GAGCTAGGTC GCCTTGCATT GTCTGCATGT GTCATCAACG ACATCTTGGG GATTTTTTCC
661 ATGATAGTTG CCTCTATACA AGCGACCTAC ATTCATGTTT CACATGCAAC AGCCTATCGT
721 GACACTGTCG CGGTGATCAT CTTTTTTCTC GTCGTCTTTC TTGTTTTTAA GCCTATGGTG
781 CAATGGGTCA TAGACCGCAC ACCGGAAGAC AAGCCAGTGG AGGATATGTA CATTCATGCC
841 GTGATTATTA CCGCATTGGC TTCCGCTGCT TATTTTGTGT TTTTCAACAT GAAATATATT
901 TTAGGACCAT TAATGATTGG CATCATCATA CCAGAGGGTC CACCATTAGG ATCGGCTCTA
961 GAGGCTAAGT TTGAGAGGCT CACAATGAAC GTGTTCTTAC CAATCTCAAT CACATTCAGC
1021 GCGATGAGAT GTGATGGAGC AAGGATCCTT AGCCAGTTCA ATGACATCTT CTTCAACATC
1081 TTCCTAACAT TTCTTATACT TGTCATAAAA CTGGTCGCAT GCCTTGCACC TTGCTTGTAC
1141 TACAAGTTAC CTCTCAGTGA ATCCTTGGCT GTTTCCTTCA TCTTGAGCTA CAAAAGTTTT
1201 GCTGATTTTG TTCTCTATGA AGCTGTATTA GACGACACGT ACATATCGCA AGCCACTTAC
1261 TCGTTCTTAA TCTTATATTC GCTACTAAAT GCCGGGATTG TCCCTACTGT CTTAAGGAGG
1321 ATGTACGATC CAAGAAGAAA GTACGTTAAT TACCAGAAAA GGGACATATT GCATCTAGAA
1381 CGAAACTCAG ATCTTCGAAT TCTAACTTGT TTGCACAAAC CAGAAAACGT CTCAGAGACC
1441 ATAGCATTCC TACAATTGTT GTCCTCACCG AACCTAGACT TCCCTATCGC GGTTACAGTT
1501 CTCCACCTTG TGAAGCTCGT TGGTCAGATA AACCCTATCA TAGTCTCACA CGACAAGAAA
1561 TTGAAACGGC TTAACAAAGA CTCATACATC CATACCGCAA ACCTTGCCTT TAGACAATTC
1621 GTGTTAGAAA GCTTAGAGTC TGTAACCGTG ACAACGTTCA CTGCGTTCTC GCATGAAAAC
1681 TTGATGCACG AAGACATTTG TACACTTGCA CTTGACAAAA CAACATCGAT GATTGTCGTC
1741 CCATCGGGGA GGAAATGGAC TGTAGATGGG TTATTCGAGT CTGACAACAC TGCTATAAGA
1801 CATCTAAACC AGTCGTTACT CGATCGTGCG CCTTGTTCTA TCGGCATACT AGTAGACCGT
1861 GGACAATTCT CGCGAAAAAG TATTGTAACG AGCAAAAAAA GGTACATCAT TGATGTTGGT
1921 GTGCTCTTCA TTGGAGGCAA AGACGATAGG GAAGCACTAT CATTGGTGAA GAGGATGAAA
1981 AATAACCCGA GGATCCGTGT AACCGTGATC CGACTCGTCT TCGACCATGA AATAGAGTCA
2041 GATTGGGATT ATATTCTTGA TAACGAAGGC TTAAAGGATT TGAAGAGTAC TGAAGACAAC
2101 AAAGATATTG ATTATATAGA GAGGATTGTG ACTAGTAGTG TTGAGGTAGT CAAAGCTGTC
2161 CAATTGCTTG CAGAAGAGTA CGATCTAATG GTGGTCGGGA GAGATCATGA TATGACATCA
2221 CAAGACTTAT CAGGACTAAT GGAATGGGTC GAACTACCAG AGTTAGGTGT CATCGGGGAT
2281 TTGCTGGCGG CTAGAGATCT AAGCTCTAAG GTTTCGGTTT TAGTAGTTCA ACAACAACAA
2341 CAACGAACGT GA
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Revised Protein Sequence (783 aa):
1 MNTTTYIGDC RISFFNISSQ GFWDNLKSPD VVFGYSLPLL EIQIILIFFC IVMSHMFLRC
61 IGISQIASYM IAGIVLGPQL FDVLEKSSGK LSVDPALDGI AALRCISVFG TLMFTFLMTV
121 RTSRRVAFHS GKLPVVIGIV SFFAPLFGLG FQNFFSDNID PHYMPLTKAL GERTAIVITQ
181 SSILLPSTTY ILLELKIINS ELGRLALSAC VINDILGIFS MIVASIQATY IHVSHATAYR
241 DTVAVIIFFL VVFLVFKPMV QWVIDRTPED KPVEDMYIHA VIITALASAA YFVFFNMKYI
301 LGPLMIGIII PEGPPLGSAL EAKFERLTMN VFLPISITFS AMRCDGARIL SQFNDIFFNI
361 FLTFLILVIK LVACLAPCLY YKLPLSESLA VSFILSYKSF ADFVLYEAVL DDTYISQATY
421 SFLILYSLLN AGIVPTVLRR MYDPRRKYVN YQKRDILHLE RNSDLRILTC LHKPENVSET
481 IAFLQLLSSP NLDFPIAVTV LHLVKLVGQI NPIIVSHDKK LKRLNKDSYI HTANLAFRQF
541 VLESLESVTV TTFTAFSHEN LMHEDICTLA LDKTTSMIVV PSGRKWTVDG LFESDNTAIR
601 HLNQSLLDRA PCSIGILVDR GQFSRKSIVT SKKRYIIDVG VLFIGGKDDR EALSLVKRMK
661 NNPRIRVTVI RLVFDHEIES DWDYILDNEG LKDLKSTEDN KDIDYIERIV TSSVEVVKAV
721 QLLAEEYDLM VVGRDHDMTS QDLSGLMEWV ELPELGVIGD LLAARDLSSK VSVLVVQQQQ
781 QRT
›› Fasta: All CHX Protein Sequences
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Back to the Top · Last Revision: October 16, 2006 |
