Model Organism Web Sites

Model Organisms for Biomedical Research (NIH)
Model Organisms at the Virtual Library
GMOD -- the genome database professionals
Inparanoid Eukaryotic ortholog groups
GSA Genetics Society of America
Nature's Genome Gateway 
UCSC Genome Browsers

Tree of Life Web Project
Encyclopedia of Life an electronic page for each species on earth
Catalogue of Life A comprehensive catalogue of all known species
Time Tree Timescale and Evolutionary History
NCBI Taxonomy Browswer

Echobase
Cyanobase Cyanobacterial genomes
Microbial Genome Database
Comprehensive Microbial Resource
NCBI Microbial Genomes
Microbial Genomics (DOE)

Saccharomyces cerevisiae
SGD (Saccharomyces Genome Project) (Stanford)
CYGD Comprehensive Yeast Genome Database (MIPS)

Schizosaccharomyces pombe Genome Sequencing Project
The Fungal Genome Initiative at the Broad Institute
dictyBase Dictyostelium discoideum
PlasmoDB The plasmodium database

C. elegans WWW server Southwestern Medical School.
WormBase, WormAtlas and Textpresso (literature)
C. elegans II Online book from CSHL Press; Riddle, Blumenthal, Meyer and Priess

Flybase (other Drosophila genomes)
BDGP The Berkeley Drosophila Genome Project
Interactive Fly The Interactive Fly, a guide to Drosophila genes
FlyEx Segmentation Gene Expression Data

Plants

Phytozome A comparative genomics resource for photosynthetic life at JGI.

Arabidopsis thaliana

TAIR The Arabidopsis Information Resource
GARNet Genomic Arabidopsis Resource Network (UK)
MIPS Arabidopsis thalianadatabase.
TIGR The Institute for Genomic Research Arabidopsis thaliana annotation database.
PlantGDB and AtGDB Plant and Arabidopsis Genome Databases
Arabidopsis Links My own page of Arabidopsis links

TIGR rice database The Institure for Genomic Research Rice database.
Rice Genome Project The RGP is the Japanese (lead) site for Rice genomics.

MGI Mouse Genome Informatics, based at Jackson Labs, Bar Harbor, Maine. 
NCBI's Mouse Genome Resources
MIT's Whitehead Institute mouse genome press release and links 
Publication Mouse Genome Sequencing Consortium (2002) Nature 420: 520-562.

ZFIN Zebra Fish Information Network
The Danio rerio Sequencing Project at the Sanger Institute 
Rat The Rat genome database

e!, the Project Ensembl Genome Browser.
UCSC, The U.C. Santa Cruz Genome Bioinformatics site.
NCBI The National Center for Biotechnology Information, including LocusLink; OMIM, Online Mendelian Inheritance in Man; and SNPs, (in the human nuclear genome)

Reactome, Core pathways.

Steve Mount contact My home page BSCI410 MOCB630 Bioinformatics Links GEMS ATRIUM
Last modified Aug. 11, 2009