Comparative Bioinformatics -- Links
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Comparative Bioinformatics -- Links |
U. Maryland library site for this class: http://www.lib.umd.edu/UMCP/MCK/TUTOR/bioinformatics.html
University of Maryland Biotechnology Institute (UMBI): http://www.umbi.umd.edu
UMBI Computer Resources: http://www.umbi.umd.edu/computing/
Ambiguity codes, abbreviations, and the genetic code
Overview of Biological Diversity
NCBI: http://www.ncbi.nlm.nih.gov
EMBL (European Molecular Biology Lab): http://www.embl-heidelberg.de/
The EMBL Bioinformatics Institute: http://www.ebi.ac.uk/
With an extensive archive of downloadable software: ftp://ftp.ebi.ac.uk//pub/
DNA Data Bank of Japan: http://www.ddbj.nig.ac.jp
Organellar genome project (Canada): http://megasun.bch.umontreal.ca/
Ribosomal Database Project: http://www.cme.msu.edu/RDP
Webcutter: http://firstmarket.com/firstmarket/cutter/
WebGene: http://www.bio.geneseo.edu/~yin/WebGene/WebGene.html
TreeBASE - A database of phylogenetic trees and data matrices published in the primary systematic literature.
Genome Browsers
Ensembl: http://www.ensembl.org
University of California, Santa Cruz: http://genome.cse.ucsc.edu
Contig Assembly and Sequence Analysis
Gene Codes Corporation (Sequencher): http://www.genecodes.com/
Comparative analysis
MacClade Home Page: MacClade Home Page
PAUP Home Page: http://www.lms.si.edu/PAUP/index.html
National Center for Genome Resources: http://www.ncgr.org/
Genome Sequence Data base: http://www.ncgr.org/research/sequence/
TIGR: http://www.tigr.org
Celera: http://www.celera.com
OU Genomics: http://www.genome.ou.edu/
PHRMA: http://www.phrma.org/genomics/index.html
GenomeWeb links to genomic sites: http://www.hgmp.mrc.ac.uk/GenomeWeb/
DOGS - Database Of Genome Sizes: http://www.cbs.dtu.dk/databases/DOGS/index.html
Guides to Taxonomic Information: http://35a-505.umd.edu/taxonomy.html
The Tree of Life Project Root Page
University of California Museum of Paleontology, specifically the Phylogeny of Life pages
Biodiversity and Biological Collections WWW Server
Smithsonian Natural History Home Page
Resources
BCM Search Launcher: Multiple Sequence Alignments
BLAST PROTEIN AGAINST THE COMPLETE GENOMES
Molecular Biological FTP servers
The WWW Virtual Library: Evolution (Biosciences)
The WWW Virtual Library (Biosciences)
RNA secondary structure (Gutell Lab): http://www.rna.icmb.utexas.edu/
Molecular Biology
Protocols on the World Wide Web
Perkin Elmer's PCR Technical Tip
Funding Agencies
The National Science Foundation
The National Institutes of Health