Exercises
·Unix Introduction
·BLAST
·PERL
·Genbank
·BLAST, GCG
·GCG
·Seqlab
·Synthesis
·MSA
·Paup
·Phylogeny
·Examine


·An editor primer
·A GCG cheatsheet
·Flat2fasta homework
·Dynamic Programming homework
·High scoring words homework
·GCG homework
·Seqlab homework
·Mystery sequence homework
·Paup homework

Last Class!

Imagine that you are working upon a sequencing project and you acquire the following sequence. What can you learn about it? What active site(s) does it have? Using it as a starting point, create a multiple sequence alignment of similar genes in 10 genomes and attempt to gain some evolutionary insight from this alignment.

ggtgtgaggc cggttcagcc agttgcatct cgtcttcctg ggcctgtttg aaactttagt
gacatggcag aacaggatgt ggaaaatgag cttttggatt atgatgaaga tgaagagccc
caggtacccc aggagagcac tccagctccc ccgaagaaag atgtcaaagg atcttatgtc
tccatccaca gttctggctt ccgggacttt ctgctgaagc cggagctcct gagagctata
gttgactgtg gctttgaaca tccttcagag gtccagcatg aatgtattcc ccaggccatt
ctgggtatgg atgtcctgtg ccaagccaag tctgggatgg gcaagacagc tgtgtttgtg
ctggccaccc tgcagcagat tgaacccatc aatggccagg tatcagtact ggtcatgtgc
cacacaaggg agctggcctt ccagatcagc aaggagtatg agcgcttctc gaagtacatg
cccagtgtca aggtatctgt gttctttgga ggcctctcca ttaagaaaga tgaagatgtg
ttaaagaaga actgtcccca tgttgtggtg gggacaccag gccggatcct ggccctcgtg
cggagcagga gcctcaacct gaggaatgtg aagcactttg tgctagatga atgtgacaag
atgctggaac agctggacat gcgccgggat gtacaggaga tctttcgtct gacaccccat
gagaagcaat gtatgatgtt cagcgccacc ctgagcaagg agatccggcc agtctgcagg
aagttcatgc aggatcctat ggaggtgttt gtggacgacg agaccaagct cacactgcat
gggctgcagc agtattacgt caaactcaag gacagtgaga agaatcgtaa actcttcgac
ctccttgacg tgctagagtt taaccaggtg gtgatctttg tcaagtctgt gcagcgctgc
atggccctgg cccagctcct agtggaacag aattttccgg ctatcgctat tcacagaggc

Created: Wed Sep 15 00:58:22 EDT 2004 by Charles F. Delwiche
Last modified: Mon Nov 8 15:49:44 EST 2004 by Ashton Trey Belew.