Exercises
·Unix Introduction
·BLAST
·PERL
·Genbank
·BLAST, GCG
·GCG
·Seqlab
·Synthesis
·MSA
·Paup
·Phylogeny
·Examine


·An editor primer
·A GCG cheatsheet
·Flat2fasta homework
·Dynamic Programming homework
·High scoring words homework
·GCG homework
·Seqlab homework
·Mystery sequence homework
·Paup homework

Consider the sequence homework1.fasta What can you determine about this sequence? Prepare a brief (ca. 2-3 page) report on the sequence, including a feature map, descriptions of key features, information on the probable origin and identity of the sequence, and any other interesting tidbits you can discern from analysis of the sequence. Your report should be interpretive and well written, and should NOT include printouts of all analyses you performed. Rather it should document the logical process of hypothesis development and testing that you used to study the sequence, present printouts from analyses that provided key insights, and explain your rationale for your analyses and conclusions. The homework will be graded on the basis of accuracy, analytical rationale, and clarity of presentation.


Created: Wed Sep 15 00:58:22 EDT 2004 by Chuck Delwiche
Last modified: Tue Oct 19 13:32:02 EDT 2004 by Ashton Trey Belew.